Plasmids
Plasmids from our work are available from Addgene. Please visit the Stephen Royle Lab page on Addgene to find and request materials.
Software
Software under development can be found on Steve’s GitHub profile. Completed projects are usually found on the Royle Lab or CMCB organisation GitHub profiles.
Code and data associated with our papers can be found on the publications page.
R packages
| Name | Description | DOI |
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| TrackMateR |
 R package to analyse TrackMate data.
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| SuperPlotR |
 Making SuperPlots in R
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| VolcanoPlotR |
 Making VolcanoPlots in R
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Other software
| Name | Description | DOI |
|---|---|---|
| bioRxiv LaTeX Template | Our lab’s LaTeX template for bioRxiv preprints | |
| CellMigration | IGOR package to analyse cell tracking data |
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| CellShape | IGOR package to analyse cell shapes |
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| VolcanoPlot | IGOR package to analyse proteomic data |
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| SuperPlot | IGOR package to make SuperPlots | |
| WafflePlots | IGOR package to make waffle plots (grid representation alternative to pie charts | |
| ImageJ Update Site |
Figure making utilities for Fiji/ImageJ. Add using quantixed Update Site in Fiji.
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| Image Analysis Macros | Our lab’s commonly used macros and scripts for ImageJ and python. | |
| r-for-cell-biologists | Training resources to teach “R for cell biologists” and not teaching R to cell biologists |
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There are lots of other packages available on Steve’s GitHub profile.
Talks
ASCB talk: “From Microscope to Figure”
Talk on assembling figures using the quantixed update site in Fiji